Bibliography Table

This format is the same bibliography data as bibliography

Year Type Authors Title Venue DOI
2026.0 Presentation J. P Fairbanks Compositional Modeling: Structures, Dynamics, Optimization New Orleans, LA
2026 Proceedings Y Zhao, Tyler Hanks, Hans Riess, Samuel Cohen, Matthew Hale, James Fairbanks Asynchronous nonlinear sheaf diffusion for multi-agent coordination accepted
2026 Proceedings Tyler Hanks, Cristian Nino, Joana Bou Barcelo, Austin Copeland, Warren Dixon, James Fairbanks Heterogeneous Multi-agent multi-target tracking using cellular sheaves to appear
2026 Proceedings Keith Currier, Wilmer Leal, George Rauta, Austin Copeland, Warren Dixon, James Fairbanks Whitney Control Barrier Functions: A Mesh-based Geometric approach via Discrete Exterior Calculus in press
2026.0 Presentation T Hanks, M Klawonn, E Patterson, M Hale, J. P Fairbanks Categorical Foundations of Distributed Optimization and Learning Joint Mathematics Meeting, Washington DC
2026.0 Presentation J. P Fairbanks Panel on Applied Category Theory for Compositional Decision Making New Orleans, LA
2026.0 Presentation G Rauta, J. P Fairbanks, W Kuzendorf Low-Mach Compressible Navier-Stokes Using Discrete Exterior Calculus on Rectilinear Grids Munich, Germany
2026.0 Presentation J Bou Barcelo, J. P Fairbanks Heterogeneous Multi-Agent Multi-Target Tracking Atlanta, GA
2026.0 Presentation T Hanks, J. P Fairbanks Coordination Sheaves Atlanta
2026.0 Presentation T Hanks, H Reiss, S Cohen, T Gross, M Hale, J. P Fairbanks Distributed Multi-Agent Coordination over Cellular Sheaves Washington DC
2026.0 Presentation T Gross, J. P Fairbanks Quadrotor Coordination Using Cellular Sheaves and Linearized LQR FL, USA
2026.0 Presentation S Cohen, J. P Fairbanks Federated Learning with Cellular Sheaves Gainesville, FL
2025.0 Presentation J. P Fairbanks Going beyond graphs: simplicial, hyper, and relational structure Pittsburgh
2025.0 Presentation J. P Fairbanks New Approaches in Computational Physics: Multiphysics and Multiscale with Discrete Exterior Calculus Adelphi, MD
2025.0 Presentation J. P Fairbanks, W Leal Computing Fixed Points of CTLNs with Separated Presheaves, Sheaves and Dynamic Programming Online
2025.0 Presentation W Leal Temporal Analysis of Data Using Category Theory and the Hidden Connection Between Persistence and Accumulation Quantil, Colombia
2025.0 Presentation J. P Fairbanks, W Leal Sheaf Cohomology on Simplicial Complexes Gainesville, FL
2025.0 Presentation J. P Fairbanks Building Modeling and Simulation Tools on Discrete Exterior Calculus Foundations Chicago, Ill
2025 Presentation James Fairbanks, Evan Patterson Compositional Development of Compositional Mathematics Applied Category Theory (Gainesville, FL)
2025.0 Presentation J. P Fairbanks, N Kim T6: Validation, Uncertainty Quantification, Uncertainty Budget, Workflow and Data Management Gainesville, FL
2025.0 Presentation G Rauta, J. P Fairbanks Modeling of Coupled Weakly Compressible Navier-Stokes and Thermal Equation in the Discrete Exterior Calculus Adelphi, MD
2025.0 Presentation J. P Fairbanks Introduction to Applied Category Theory for Compositional Decision Making Denver, CO
2025.0 Presentation T Hanks, J. P Fairbanks Category Theory for Distributed Optimization Gainesville, FL
2025.0 Presentation J. P Fairbanks, W Leal Sheaves in Time Varying Data and Dynamical Systems Gainesville, FL
2025.0 Presentation T Hanks, J. P Fairbanks Multiagent Autonomy with Cellular Sheaves Atlanta, GA
2025.0 Presentation J. P Fairbanks, A Zare Domain Transfer for Continuity of Performance Across SAS Systems ​ Online
2025.0 Presentation J. P Fairbanks Compositional Modeling in Applied Category Theory for Compositional Decision Making Denver, CO
2025.0 Presentation A Wall, J. P Fairbanks A Category-Theoretic Approach to Resource Optimization Gainesville, FL
2025 Presentation James Fairbanks Modeling with ACT for Compositional Decision Making American Control Conference (Denver, CO)
2025.0 Presentation A Wall, J. P Fairbanks Structured Decompositions Gainesville, FL
2025.0 Presentation J Zelko, M Cuffaro, S Wu, J. P Fairbanks A Case Study in Public Health Research Gainesville, FL
2025.0 Presentation J. P Fairbanks, E Patterson AlgebraicJulia Compositional Development of Compositional Mathematics Gainesville, FL
2025 Presentation Kevin Carlson Multigrid Methods for Structure Preserving Discretizations 22ND Copper Mountain Conference on Multigrid Methods (Copper Mountain, CO)
2025.0 Presentation W Leal, J. P Fairbanks Sheaves in Dynamical Systems: Enumerating Fixed Points of CTLNs Toledo, OH
2025 Proceedings Mason Lary, Richard Samuelson, Alexander Wilentz, Alina Zare, Matthew Klawonn, James Fairbanks Learning diagrams: a graphical language for compositional training regimes The thirteenth international conference on learning representations
2025 Proceedings Tyler Hanks, Hans Riess, Samuel Cohen, Trevor Gross, Matthew Hale, James Fairbanks Distributed Multi-agent Coordination over Cellular Sheaves IEEE Conference on Decision and Control DOI
2024 Benjamin Merlin Bumpus, James Fairbanks, Will J. Turner Pushing Tree Decompositions Forward Along Graph Homomorphisms DOI
2024 Proceedings Tyler Hanks, Baike She, Matthew Hale, Evan Patterson, Matthew Klawonn, James Fairbanks Modeling Model Predictive Control: A Category Theoretic Framework for Multistage Control Problems 2024 American Control Conference (ACC) DOI
2024 Tyler Hanks, Matthew Klawonn, Evan Patterson, Matthew Hale, James Fairbanks A Compositional Framework for First-Order Optimization DOI
2024 Presentation James P Fairbanks, Rebekah Aduddell, Amit Kumar, Pablo S Ocal, Evan Patterson, Brandon T Shapiro A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks AMS Southeastern Sectional Meeting (Tallahassee, FL)
2024 Article Rebekah Aduddell, James Fairbanks, Amit Kumar, Pablo S. Ocal, Evan Patterson, Brandon T. Shapiro A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks Compositionality DOI
2024 Article Kevin Arlin, James Fairbanks, Tim Hosgood, Evan Patterson The diagrammatic presentation of equations in categories arXiv preprint arXiv:2401.09751
2024 Article Luke Morris, Andrew Baas, Jesus Arias, Maia Gatlin, Evan Patterson, James P. Fairbanks Decapodes: A diagrammatic tool for representing, composing, and computing spatialized partial differential equations Journal of Computational Science DOI
2024 Article Benjamin Merlin Bumpus, Matteo Capucci, James Fairbanks, Daniel Rosiak Failures of compositionality: a short note on cohomology, sheafification and lavish presheaves arXiv preprint arXiv:2407.03488
2024 Article Benjamin Merlin Bumpus, James Fairbanks, Fabrizio Genovese, Caterina Puca, Daniel Rosiak How nice is this functor? Two squares and some homology go a long way Proceedings of Applied Category Theory
2024 Proceedings Owen Lynch, Kris Brown, James Fairbanks, Evan Patterson GATlab: Modeling and Programming with Generalized Algebraic Theories Electronic Notes in Theoretical Informatics and Computer Science
2024.0 Presentation J. P Fairbanks A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks Tallahassee, FL
2023.0 Presentation L. L Morris, A Baas, J. P Fairbanks, J Arias, M Gaitlin Abstraction and Composition in Modeling and Simulation Amsterdam, NL
2023.0 Presentation J. P Fairbanks Decapodes Gainesville, FL
2023 Proceedings Angeline Aguinaldo, Evan Patterson, James Fairbanks, William Regli, Jaime Ruiz A Categorical Representation Language and Computational System for Knowledge-Based Robotic Task Planning [Best Paper Award] Proceedings of the AAAI Symposium Series DOI
2023.0 Presentation O Lynch, K Brown, J. P Fairbanks, E Patterson Gatlab College Park, MD
2023.0 Presentation J. P Fairbanks, L. L Morris, G Rauta Categorical Composition of Discrete Exterior Calculus Climate Models London, UK
2023.0 Presentation J. P Fairbanks, L. L Morris, G Rauta Computational Multiphysics in a Categorical Framework College Park, MD
2023.0 Presentation L. L Morris, A Baas, J. P Fairbanks, J Arias, M Gaitlin Abstraction and Composition in Modeling and Simulation Gainesville, FL
2023.0 Presentation L. L Morris, A Baas, J. P Fairbanks, J Arias, M Gaitlin Abstraction and Composition in Modeling and Simulation Gainesville, FL
2023.0 Presentation J. P Fairbanks, T. E Hanks, B She, E Patterson, M Hale, M Klawonn A Compositional Framework for Convex Model Predictive Control College Park, MD
2023 Ernst Althaus, Benjamin Merlin Bumpus, James Fairbanks, Daniel Rosiak Compositional Algorithms on Compositional Data: Deciding Sheaves on Presheaves DOI
2023.0 Presentation S Libkind, B. M Bumpus, J. L Garcia, L. H Sorkatti, S Tenka Additive Invariants of Open Petri Nets College Park, MD
2023.0 Presentation B. M Bumpus Chopping things up to decide stuff fast Nottingham, United Kingdom
2023.0 Presentation B. M Bumpus, J. P Fairbanks, D Rosiak, E Althaus Compositional Algorithms on Compositional Data: Deciding Sheaves on Presheaves College Park, MD
2023.0 Presentation B. M Bumpus, J. P Fairbanks Chopping things up to decide stuff fast Boca Raton, FL
2023 Article Kristopher Brown, Evan Patterson, Tyler Hanks, James Fairbanks Computational category-theoretic rewriting Journal of Logical and Algebraic Methods in Programming DOI
2023 Article Robert K Garrett, James P Fairbanks, Margaret L Loper, James D Moreland The application of applied category theory to quantify mission success Simulation DOI
2023 Presentation Rebekah Aduddell, Pablo S Ocal, James P Fairbanks, Evan Patterson, Brandon Shapiro, Amit Kumar A categorical framework for (gene) regulatory networks Joint Mathematics Meeting (Boston, MA)
2023 Proceedings Baike She, Tyler Hanks, James Fairbanks, Matthew Hale Characterizing Compositionality of LQR from the Categorical Perspective 2023 62nd IEEE Conference on Decision and Control (CDC) DOI
2023 Presentation James P Fairbanks, Owen Lynch Computational category theory in applied mathematics Joint Mathematics Meetings (Boston, MA)
2023.0 Presentation J. P Fairbanks, T Hanks, B She, M Hale, E Patterson, M Klawonn A Compositional Framework for Model Predictive Control Gainesville, FL
2023.0 Presentation L Morris, E Nathan Discourse Sheaves for Opinion Dynamics over Social Media Data Livermore, CA
2023 Article Evan Patterson, Andrew Baas, Timothy Hosgood, James Fairbanks A diagrammatic view of differential equations in physics Mathematics in Engineering DOI
2022.0 Presentation J. P Fairbanks, O Lynch Computational Category Theory in Applied Mathematics Boston, MA
2022 Proceedings Kristopher Brown, Evan Patterson, Tyler Hanks, James Fairbanks Computational Category-Theoretic Rewriting [Best Paper] Graph Transformation: 15th International Conference, ICGT 2022, Held as Part of STAF 2022, Nantes, France, July 7–8, 2022, Proceedings DOI
2022.0 Presentation J. P Fairbanks Diagrammatic Equations for Complex Machine Learning Formulations Gainesville, FL
2022.0 Presentation K Brown, J. P Fairbanks Automated Model Space Exploration Online
2022.0 Presentation J. P Fairbanks, R Aduddell, P. S Ocal, E Patterson, B Shapiro, A Kumar A Categorical Framework for (Gene) Regulatory Networks Boston, MA
2022.0 Presentation B. M Bumpus, J. P Fairbanks Structured Decompositions: Recursive Data and Recursive Algorithms Boston, MA
2022.0 Presentation J. P Fairbanks Scientific Modeling with AlgebraicJulia Online
2022.0 Presentation J. P Fairbanks Diagrammatic Equations in Physics: Directly Computable Models Livermore, CA
2022.0 Presentation T Hanks Compositional Convex Optimization Rome, NY
2022.0 Presentation J. P Fairbanks, E Patterson Enkix Task Reasoning Gainesville, FL
2022.0 Presentation J. P Fairbanks Scientific and Engineering Modeling with Applied Category Theory Arlington, VA
2022.0 Presentation J. P Fairbanks Model Aware Scientific Computing with Categories Rome, NY
2022.0 Presentation S Libkind, J. P Fairbanks Compositional Modeling of Disease Dynamics Online
2022.0 Presentation J. P Fairbanks, E Patterson Enkix Task Reasoning Gainesville, FL
2022.0 Presentation J. P Fairbanks Scientific and Engineering Modeling with Applied Category Theory Gainesville, FL
2022 Article Sophie Libkind, Andrew Baas, Evan Patterson, James Fairbanks Operadic Modeling of Dynamical Systems: Mathematics and Computation Electronic Proceedings in Theoretical Computer Science DOI
2022.0 Presentation J. P Fairbanks Introduction to Category Theory Oslo, NO
2022.0 Presentation J. P Fairbanks Diagrammatic Equations In Physics, Directly Computable Models Oslo, NO
2022.0 Presentation J. P Fairbanks Computational Modeling with Category Theory Gainesville, FL
2022.0 Presentation J. P Fairbanks Using Category Theory to Design Computational Mathematics Software Gainesville, FL
2022 Proceedings Sophie Libkind, Andrew Baas, Micah Halter, Evan Patterson, James Fairbanks Typed and stratified models with slice categories Applied Category Theory
2022 Proceedings Kristopher Brown, Tyler Hanks, James Fairbanks Compositional Exploration of Combinatorial Scientific Models DOI
2022 Presentation Evan Patterson, Timothy Hosgood, Andrew Baas, James Fairbanks Diagrammatic differential equations: Formal categorical framework and applications to multiphysics simulation Applied Category Theory (Glasgow, UK) DOI
2022 Article Evan Patterson, Owen Lynch, James Fairbanks Categorical Data Structures for Technical Computing Compositionality DOI
2022 Presentation Sean L Wu, Sophie Libkind, Kristopher Brown, Evan Patterson, James Fairbanks Individual. jl: Rewriting individual-based models for epidemiology using graph rewriting Applied Category Theory (Glasgow, UK)
2022.0 Presentation J. P Fairbanks Computational Physics Modeling with Categories Erlangen-Nuernberg, Germany
2022 Article Sophie Libkind, Andrew Baas, Micah Halter, Evan Patterson, James P. Fairbanks An algebraic framework for structured epidemic modelling Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences DOI
2022.0 Presentation J. P Fairbanks Applied Category Theory for the Mathematics of Disease Vancouver, Canada
2021 Presentation Matthew Jackson, Micah Halter, Trevor Goodyear, Brian O’Donnell, James Fairbanks Accelerating automatic target recognition performance evaluation with a relational database Tri-Service Radar Symposium
2021.0 Presentation J. P Fairbanks The AlgebraicJulia Ecosystem: a Categorical Approach to Technical Computing Berkeley, CA
2021.0 Presentation J. P Fairbanks Progress towards the GroMet specification for semantic model exchange Arlington, VA
2021.0 Presentation J. P Fairbanks Introduction to the AlgebraicJulia Software Ecosystem Gainesville, FL
2021.0 Presentation J. P Fairbanks Computational Categorical Algebra with Catlab Paris, FR
2021 Presentation Owen Lynch, Evan Patterson, James Fairbanks Shaped data with acsets JuliaCon (Virtual)
2021.0 Presentation J. P Fairbanks, E Patterson Compositional Modeling with AlgebraicJulia Online
2021 Presentation Sophie Libkind, James Fairbanks AlgebraicDynamics: Compositional dynamical systems JuliaCon (Virtual)
2021.0 Presentation J. P Fairbanks Generalized Algebraic Theories for Enhancing Multiphysics: An Introductory Deep Dive Arlington, VA
2021.0 Presentation O Lynch, E Patterson, J. P Fairbanks Shaped Data with ACSets Online
2021 Article Yaniv Mordecai, James P Fairbanks, Edward F Crawley Category-theoretic formulation of the model-based systems architecting cognitive-computational cycle Applied Sciences
2021.0 Presentation J. P Fairbanks, J Perez, A Baas, M Ferrall-Fairbanks, M. O Platt Parameter Estimation by Minimizing the Loss with Respect to a Finite Difference Approximation on the Vector Field Orlando, FL
2021.0 Presentation S Libkind, E Patterson, J. P Fairbanks Shaped Data with ACSets Online
2021.0 Presentation J. P Fairbanks Model Aware Computing with Scientific Categories Arlington, VA
2021 Presentation Owen Lynch, James P. Fairbanks, Evan Patterson Graphical semantic modeling with semagrams.jl Applied Category Theory (Cambridge, UK)
2021.0 Presentation J. P Fairbanks Categorical Scientific Knowledge Representation Arlington, VA
2021 Presentation Julian Perez, Andrew Baas, Meghan C. Ferrall-Fairbanks, Manu O. Platt, James P. Fairbanks Parameter estimation by minimizing the loss with respect to a finite difference approximation on the vector field Biomedical Engineering Society Annual Meeting (Orlando, FL)
2020.0 Presentation J. P Fairbanks Rethinking Set Theory and Computational Mathematics Gainesville, FL
2020 Proceedings James P. Fairbanks, Natalie Fitch, Franklin Bradfield, Erica Briscoe Credibility Development with Knowledge Graphs Lecture Notes in Computer Science DOI
2020 Article Erica Briscoe, James Fairbanks Artificial scientific intelligence and its impact on national security and foreign policy Orbis
2020 Proceedings Micah Halter, Evan Patterson, Andrew Baas, James Fairbanks Compositional Scientific Computing with Catlab and SemanticModels
2020 Proceedings Micah Halter, Christine Herlihy, James Fairbanks A Compositional Framework for Scientific Model Augmentation Electronic Proceedings in Theoretical Computer Science DOI
2020 Proceedings Micah Halter, Sreenath Raparti, Kun Cao, Christine Herlihy, James Fairbanks SemanticModels. jl: a julia package for scientific model augmentation Proceedings of the JuliaCon conferences
2019 Article Molly Nadolski, James Fairbanks Complex systems analysis of hybrid warfare Procedia Computer Science DOI
2019 Article Christine Herlihy, Kun Cao, Sreenath Reparti, Erica Briscoe, James Fairbanks Semantic Program Analysis for Scientific Model Augmentation Modeling the World’s Systems
2019 Presentation James P. Fairbanks Semantic model understanding for scientific model augmentation Systems Biology of Human Disease, (Berlin, DE)
2019 Presentation Christine Herlihy, James Fairbanks semanticmodels.jl: Not just another modeling framework JuliaCon (Baltimore, MD)
2019 Proceedings Kun Cao, James Fairbanks Unsupervised Construction of Knowledge Graphs From Text and Code SIGKDD Conference on Knowledge Discovery and Data Mining International Workshop on Mining and Learning with Graphs
2018 Proceedings Rohit Varkey Thankachan, Brian P. Swenson, James P. Fairbanks Performance Effects of Dynamic Graph Data Structures in Community Detection Algorithms 2018 IEEE High Performance extreme Computing Conference (HPEC) DOI
2018 Proceedings Nigel Campbell, Trevor Goodyear, Winston Messer, Evan Stuart, James Fairbanks Digital Witness: Remote Method for Volunteering Digital Evidence on Mobile Devices 2018 IEEE International Symposium on Technologies for Homeland Security (HST) DOI
2018 Presentation Mathieu Besançon, James Fairbanks Graph interfaces: Bespoke graphs for every occasion JuliaCon (London, UK)
2018 Proceedings Eisha Nathan, James Fairbanks, David Bader Ranking in Dynamic Graphs Using Exponential Centrality Complex Networks & Their Applications VI DOI
2018 Proceedings James P Fairbanks, Natalie Fitch, Nathan Knauf, Erica Briscoe Credibility Assessment in the News: Do We Need to Read? WSDM/MIS2 DOI
2018 Presentation James Fairbanks The JuliaGraphs ecosystem: Move fast and don't break things JuliaCon (London, UK)
2017 Article James P Fairbanks, David A Bader, Geoffrey D Sanders Spectral partitioning with blends of eigenvectors Journal of Complex Networks
2017 Proceedings Rohit Varkey Thankachan, Eric R. Hein, Brian P. Swenson, James P. Fairbanks Integrating productivity-oriented programming languages with high-performance data structures 2017 IEEE High Performance Extreme Computing Conference (HPEC) DOI
2017 Article Eisha Nathan, Geoffrey Sanders, James Fairbanks, Van Emden Henson, David A. Bader Graph Ranking Guarantees for Numerical Approximations to Katz Centrality Procedia Computer Science DOI
2017 Presentation James Fairbanks, N Knauf, N Fitch, C Herlihy, E Briscoe Assessing credibility in the global news media
2017 Presentation T Frederick, C Herlihy, James Fairbanks Using big data to predict and analyze cooperation and conflict The Conflict Conference (University of Texas, Austin, TX)
2017 Presentation Seth Bromberger, James Fairbanks LightGraphs: Our network, our story JuliaCon (Berkeley, CA)
2017 Presentation C. S. Brown, Jonathan Duke, James P. Fairbanks, Christine Herlihy, K. Mukadam, Jason Poovey, Melissa Rost Implementing real-time patient level predictions using PLP models OHDSI Symposium
2017 Presentation James P. Fairbanks QueryGarden: growing healthy applications in well prepared SQL OHDSI Symposium (New York, NY)
2017 Proceedings David Ediger, James P. Fairbanks Deriving Streaming Graph Algorithms from Static Definitions 2017 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) DOI
2016 Proceedings Anita Zakrzewska, Eisha Nathan, James Fairbanks, David A Bader A local measure of community change in dynamic graphs 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) DOI
2016 Proceedings David Bader, Aleksandra Michalewicz, Oded Green, Jessie Birkett-Rees, Jason Riedy, James Fairbanks, Anita Zakrzewska Semantic database applications at the samtavro cemetery, georgia The 44th Computer Applications and Quantitative Methods in Archaeology Conference (CAA)
2016 Proceedings James P Fairbanks, Anita Zakrzewska, David A Bader New stopping criteria for spectral partitioning 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) DOI
2015 Presentation James Fairbanks, Geoff Sanders Discovering block structure in graphs with approximate eigenvectors SIAM Computational Science and Engineering (Salt Lake City, UT)
2015 Presentation James P. Fairbanks Discovering block structure with approximate eigenvectors SIAM Computational Science and Engineering
2015 Article James P Fairbanks, Ramakrishnan Kannan, Haesun Park, David A Bader Behavioral clusters in dynamic graphs Parallel Computing
2013 Proceedings James Fairbanks, David Ediger, Rob McColl, David A. Bader, Eric Gilbert A statistical framework for streaming graph analysis 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2013) DOI
2012 Presentation James P. Fairbanks Ramsey theorem for indecomposable matchings Graph Theory at Georgia Tech (GT@GT) (Atlanta, GA)
2011 Article James Fairbanks A Ramsey theorem for indecomposable matchings arXiv preprint arXiv:1110.3314